News and Events

Affymetrix to Acquire Panomics

Affymetrix Announces New Cost-effective Product for Standardizing Drug Metabolism Studies

11/16/2008-11/20/2008

11/19/2008-11/21/2008

Scientific Publications

Get unprecedented access to array content.

The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.

NetAffx Query Search transcript clusters and probe sets for a particular term or identifier
Batch Query Retrieve annotations for a probe list
Probe Match Find probe sets that identically match a nucleotide sequence(s)

NetAffx Query - Search probe sets for a term or identifier
Batch Query - Retrieve annotations for a probe list
BLAST - Find probe sets that BLAST align to your sequence(s) through BLAST
Probe Match - Find probes that identically match your sequence(s)
UCSC Query - Query the UCSC Browser including a custom track for your array of interest.

NetAffx Query - Search probe sets for a term or identifier
Batch Query - Retrieve annotations for a probe list
LD Mapper - Evaluate GenomeWideSNP arrays coverage for your list of rsIDs, genes, or genomic regions
UCSC Query - Query the UCSC public genome by position
SNP Finder - Search for SNPs between microsatellites

For an archival listing of NetAffx Announcements click here

Welcome to NetAffx 5
Along with a new design, look and style, some of the most requested major NetAffx features updates are included:

Better workflow navigation. Easier access to the entire range of NetAffx functions and utilities, reliable access to your usual ones.
Condensed Report mode on the result table.
LD Mapper Estimate the coverage of Affymetrix Genotyping Arrays over lists of rsIDs, genes or genomic regions.
Pop-up NetAffx help on each page. The Help Button will give you hints on your current page.
Glossaries define all the annotation data offered (see ivt expression, wt expression, genotyping).

Selected resources and documentation for getting the most out of the NetAffx™ Analysis Center

NetAffx Help Center
The complete index of documentation available for NetAffx users. Including:

Sources for NetAffx Annotation Updates See documentation for sources and versions of data that went into the annotation updates.

Glossaries of Annotation Terms (IVT Expression, WT Expression, Genotyping)

Whitepapers

NetAffx Annotation Whitepaper How does the NetAffx calculate the relationship between the probe set and the current transcript record. (IVT)
Sleuthing with NetAffx Tips and examples on how to unravel difficultprobe sets and SNPs.